STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDN14428.1GAF domain-containing protein. (238 aa)    
Predicted Functional Partners:
SDL85647.1
Response regulator receiver domain-containing protein.
 
 0.964
SDL98697.1
Signal transduction histidine kinase.
 0.948
SDM65427.1
Signal transduction histidine kinase.
 0.947
SDM90646.1
His Kinase A (phospho-acceptor) domain-containing protein.
 0.913
SDL94298.1
Signal transduction histidine kinase.
 
 0.893
SDN09854.1
PAS domain S-box-containing protein.
 0.821
SDL85530.1
PAS domain S-box-containing protein.
 0.810
SDM05006.1
Two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR.
  
 0.810
SDL64264.1
PAS domain S-box-containing protein.
 
  0.794
SDN05338.1
PAS domain S-box-containing protein.
0.792
Your Current Organism:
Pedobacter ruber
NCBI taxonomy Id: 990371
Other names: DSM 24536, LMG 26240, LMG:26240, P. ruber, Pedobacter ruber Margesin and Zhang 2013, Pedobacter sp. W1, strain W1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.