STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK13555.1Putative ABC transport system ATP-binding protein. (241 aa)    
Predicted Functional Partners:
SDK13604.1
HlyD family secretion protein.
 
 
 0.988
SDK39012.1
Lipoprotein-releasing system permease protein.
 
 0.967
SDK13586.1
Putative ABC transport system permease protein.
 
    0.949
SDK89612.1
Putative ABC transport system permease protein.
  
 0.942
SDL02786.1
Peptide/nickel transport system ATP-binding protein/peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
     
0.899
SDK03653.1
Outer membrane lipoprotein-sorting protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
   
 
 0.845
SDL09004.1
Nitrate/nitrite transport system substrate-binding protein.
 
      0.782
SDL02768.1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
     
0.639
SDK13501.1
ABC-2 type transport system ATP-binding protein.
 
  
0.622
SDK13473.1
ABC-2 type transport system permease protein.
     
 0.568
Your Current Organism:
Albidovulum xiamenense
NCBI taxonomy Id: 990712
Other names: A. xiamenense, Albidovulum sp. YBY-7, Albidovulum xiamenense Yin et al. 2012, CGMCC 1.10789, LMG 26247, LMG:26247, MCCC 1A06317, strain YBY-7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.