STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK72080.1Protein of unknown function. (153 aa)    
Predicted Functional Partners:
SDK72022.1
LPS-assembly lipoprotein.
 
     0.864
leuS
leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.842
SDK71994.1
DNA polymerase III, delta subunit.
 
     0.825
SDK71262.1
Protein of unknown function.
  
     0.770
SDK37724.1
Outer membrane protein assembly factor BamE, lipoprotein component of the BamABCDE complex.
  
     0.748
SDK93473.1
Hypothetical protein.
  
     0.689
SDK48828.1
Hypothetical protein.
  
     0.680
SDK74134.1
Penicillin-binding protein 2.
  
     0.652
SDK86558.1
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat.
  
    0.644
SDK38405.1
Peptidyl-prolyl cis-trans isomerase SurA.
  
     0.635
Your Current Organism:
Albidovulum xiamenense
NCBI taxonomy Id: 990712
Other names: A. xiamenense, Albidovulum sp. YBY-7, Albidovulum xiamenense Yin et al. 2012, CGMCC 1.10789, LMG 26247, LMG:26247, MCCC 1A06317, strain YBY-7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.