STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK98089.1Uncharacterized conserved protein YcbK, DUF882 family. (143 aa)    
Predicted Functional Partners:
SDK98114.1
Murein L,D-transpeptidase YcbB/YkuD.
 
     0.847
SDJ95183.1
Penicillin-insensitive murein endopeptidase.
  
     0.734
SDK07090.1
Glyoxylase, beta-lactamase superfamily II.
  
    0.521
SDK35754.1
Hypothetical protein.
  
     0.505
Your Current Organism:
Albidovulum xiamenense
NCBI taxonomy Id: 990712
Other names: A. xiamenense, Albidovulum sp. YBY-7, Albidovulum xiamenense Yin et al. 2012, CGMCC 1.10789, LMG 26247, LMG:26247, MCCC 1A06317, strain YBY-7
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.