STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK98971.1TRAP transporter, DctM subunit. (452 aa)    
Predicted Functional Partners:
SDK98942.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
  0.963
SDK98921.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
    0.949
SDK99174.1
TRAP transporter, DctM subunit.
  
  
 
0.913
SDK99155.1
Hypothetical protein.
     
  0.900
SDK60809.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
    0.758
SDK61712.1
Tripartite ATP-independent transporter solute receptor, DctP family.
  
    0.735
SDK32111.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
    0.719
SDK02667.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
    0.651
SDK98887.1
Indolepyruvate ferredoxin oxidoreductase beta subunit.
 
  
  0.625
SDK25389.1
TRAP-type mannitol/chloroaromatic compound transport system, substrate-binding protein.
  
     0.617
Your Current Organism:
Albidovulum xiamenense
NCBI taxonomy Id: 990712
Other names: A. xiamenense, Albidovulum sp. YBY-7, Albidovulum xiamenense Yin et al. 2012, CGMCC 1.10789, LMG 26247, LMG:26247, MCCC 1A06317, strain YBY-7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.