STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL05235.1AAA domain-containing protein. (262 aa)    
Predicted Functional Partners:
SDL05265.1
Hypothetical protein.
 
     0.935
SDL05119.1
DNA repair protein RadD.
 
     0.895
SDL05051.1
Protein of unknown function.
 
     0.894
SDL05148.1
PD-(D/E)XK nuclease superfamily protein.
 
     0.894
SDL05363.1
Helix-turn-helix domain-containing protein.
 
     0.851
SDL05207.1
Protein of unknown function.
       0.720
SDL04857.1
DNA (cytosine-5)-methyltransferase 1.
 
    0.714
SDL05178.1
Hypothetical protein.
       0.543
SDL05083.1
Hypothetical protein.
       0.542
SDK51204.1
DNA helicase-2 / ATP-dependent DNA helicase PcrA.
   
  0.519
Your Current Organism:
Albidovulum xiamenense
NCBI taxonomy Id: 990712
Other names: A. xiamenense, Albidovulum sp. YBY-7, Albidovulum xiamenense Yin et al. 2012, CGMCC 1.10789, LMG 26247, LMG:26247, MCCC 1A06317, strain YBY-7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.