STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL06579.1Ectoine hydrolase. (389 aa)    
Predicted Functional Partners:
SDL06629.1
N-alpha-acetyl-L-2,4-diaminobutyrate deacetylase.
 
  
 0.985
guaB
IMP dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
   
   0.831
SDK84663.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
 
 0.798
SDK84697.1
Sarcosine oxidase subunit gamma.
  
  
  0.754
ectC
L-ectoine synthase; Catalyzes the circularization of gamma-N-acetyl-alpha,gamma- diaminobutyric acid (ADABA) to ectoine (1,4,5,6-tetrahydro-2-methyl-4- pyrimidine carboxylic acid), which is an excellent osmoprotectant.
 
  
  0.741
SDK84638.1
Sarcosine oxidase subunit delta.
  
  
  0.732
SDK84586.1
Sarcosine oxidase subunit beta.
  
 
  0.647
SDJ97269.1
Sarcosine oxidase subunit beta.
   
 
  0.613
SDK11592.1
Hypothetical protein.
 
  
 0.605
SDK04041.1
Dimethylglycine dehydrogenase; Belongs to the GcvT family.
  
 0.604
Your Current Organism:
Albidovulum xiamenense
NCBI taxonomy Id: 990712
Other names: A. xiamenense, Albidovulum sp. YBY-7, Albidovulum xiamenense Yin et al. 2012, CGMCC 1.10789, LMG 26247, LMG:26247, MCCC 1A06317, strain YBY-7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.