STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IW20_01615Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (758 aa)    
Predicted Functional Partners:
IW20_01620
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.836
IW20_19695
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.622
pdxJ
Pyridoxamine 5'-phosphate oxidase; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate.
 
     0.614
IW20_14270
Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.608
IW20_06265
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.607
IW20_00045
Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.593
IW20_18480
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.592
IW20_01580
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.582
IW20_06270
Carbohydrate-binding protein SusD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.578
IW20_04015
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.558
Your Current Organism:
Flavobacterium hydatis
NCBI taxonomy Id: 991
Other names: ATCC 29551, CCUG 35201, CIP 104741, Cytophaga aquatilis, DSM 2063, F. hydatis, Flavobacterium sp. WBUAFS-KG3, IFO 14958, JCM 20519, LMG 8385, LMG:8385, NBRC 14958, NRRL B-14732
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.