STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IW20_06005Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (193 aa)    
Predicted Functional Partners:
IW20_12025
Cysteine hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.625
IW20_01290
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.624
IW20_03325
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.561
IW20_04005
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.561
IW20_14065
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.503
rplY
50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
   
   0.497
IW20_01575
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.491
IW20_01580
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.491
IW20_18775
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.491
rpsN
30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
   
   0.481
Your Current Organism:
Flavobacterium hydatis
NCBI taxonomy Id: 991
Other names: ATCC 29551, CCUG 35201, CIP 104741, Cytophaga aquatilis, DSM 2063, F. hydatis, Flavobacterium sp. WBUAFS-KG3, IFO 14958, JCM 20519, LMG 8385, LMG:8385, NBRC 14958, NRRL B-14732
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.