STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IW20_25215Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (281 aa)    
Predicted Functional Partners:
IW20_10045
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.742
IW20_25350
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.699
IW20_14325
RNA polymerase sigma factor rpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
    
 
 0.694
IW20_18205
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.682
IW20_01390
Malic enzyme; NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.680
IW20_02725
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.666
IW20_11910
Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.638
IW20_15305
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.635
IW20_06550
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.626
IW20_25465
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.619
Your Current Organism:
Flavobacterium hydatis
NCBI taxonomy Id: 991
Other names: ATCC 29551, CCUG 35201, CIP 104741, Cytophaga aquatilis, DSM 2063, F. hydatis, Flavobacterium sp. WBUAFS-KG3, IFO 14958, JCM 20519, LMG 8385, LMG:8385, NBRC 14958, NRRL B-14732
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.