Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ARR3 | GRM6 | ENSBTAP00000017088 | ENSBTAP00000021547 | Arrestin-C; May play a role in an as yet undefined retina-specific signal transduction. Could binds to photoactivated-phosphorylated red/green opsins; Belongs to the arrestin family. | Glutamate metabotropic receptor 6. | 0.585 |
ARR3 | NR2E3 | ENSBTAP00000017088 | ENSBTAP00000018926 | Arrestin-C; May play a role in an as yet undefined retina-specific signal transduction. Could binds to photoactivated-phosphorylated red/green opsins; Belongs to the arrestin family. | Photoreceptor-specific nuclear receptor; Orphan nuclear receptor of retinal photoreceptor cells. Transcriptional factor that is an activator of rod development and repressor of cone development. Binds the promoter region of a number of rod- and cone-specific genes, including rhodopsin, M- and S-opsin and rod-specific phosphodiesterase beta subunit. Enhances rhodopsin expression. Represses M- and S-cone opsin expression. | 0.713 |
ARR3 | POU4F2 | ENSBTAP00000017088 | ENSBTAP00000007421 | Arrestin-C; May play a role in an as yet undefined retina-specific signal transduction. Could binds to photoactivated-phosphorylated red/green opsins; Belongs to the arrestin family. | POU domain protein. | 0.477 |
ARR3 | RCVRN | ENSBTAP00000017088 | ENSBTAP00000034949 | Arrestin-C; May play a role in an as yet undefined retina-specific signal transduction. Could binds to photoactivated-phosphorylated red/green opsins; Belongs to the arrestin family. | Recoverin; Acts as a calcium sensor and regulates phototransduction of cone and rod photoreceptor cells. Modulates light sensitivity of cone photoreceptor in dark and dim conditions (By similarity). In response to high Ca(2+) levels induced by low light levels, prolongs RHO/rhodopsin activation in rod photoreceptor cells by binding to and inhibiting GRK1-mediated phosphorylation of RHO/rhodopsin. Plays a role in scotopic vision/enhances vision in dim light by enhancing signal transfer between rod photoreceptors and rod bipolar cells (By similarity). Improves rod photoreceptor sensitivi [...] | 0.839 |
ARR3 | SCGN | ENSBTAP00000017088 | ENSBTAP00000026544 | Arrestin-C; May play a role in an as yet undefined retina-specific signal transduction. Could binds to photoactivated-phosphorylated red/green opsins; Belongs to the arrestin family. | Secretagogin. | 0.430 |
ARR3 | VSX1 | ENSBTAP00000017088 | ENSBTAP00000004329 | Arrestin-C; May play a role in an as yet undefined retina-specific signal transduction. Could binds to photoactivated-phosphorylated red/green opsins; Belongs to the arrestin family. | Visual system homeobox 1; Binds to the 37-bp core of the locus control region (LCR) of the red/green visual pigment gene cluster (By similarity). May regulate the activity of the LCR and the cone opsin genes at earlier stages of development (By similarity). Dispensable in early retinal development (By similarity). | 0.637 |
ATOH7 | FOXN4 | ENSBTAP00000023292 | ENSBTAP00000014397 | Atonal bHLH transcription factor 7. | Forkhead box N4. | 0.667 |
ATOH7 | POU4F2 | ENSBTAP00000023292 | ENSBTAP00000007421 | Atonal bHLH transcription factor 7. | POU domain protein. | 0.852 |
ATOH7 | PTF1A | ENSBTAP00000023292 | ENSBTAP00000056491 | Atonal bHLH transcription factor 7. | Pancreas associated transcription factor 1a. | 0.532 |
ATOH7 | RCVRN | ENSBTAP00000023292 | ENSBTAP00000034949 | Atonal bHLH transcription factor 7. | Recoverin; Acts as a calcium sensor and regulates phototransduction of cone and rod photoreceptor cells. Modulates light sensitivity of cone photoreceptor in dark and dim conditions (By similarity). In response to high Ca(2+) levels induced by low light levels, prolongs RHO/rhodopsin activation in rod photoreceptor cells by binding to and inhibiting GRK1-mediated phosphorylation of RHO/rhodopsin. Plays a role in scotopic vision/enhances vision in dim light by enhancing signal transfer between rod photoreceptors and rod bipolar cells (By similarity). Improves rod photoreceptor sensitivi [...] | 0.568 |
ATOH7 | VSX1 | ENSBTAP00000023292 | ENSBTAP00000004329 | Atonal bHLH transcription factor 7. | Visual system homeobox 1; Binds to the 37-bp core of the locus control region (LCR) of the red/green visual pigment gene cluster (By similarity). May regulate the activity of the LCR and the cone opsin genes at earlier stages of development (By similarity). Dispensable in early retinal development (By similarity). | 0.784 |
FOXN4 | ATOH7 | ENSBTAP00000014397 | ENSBTAP00000023292 | Forkhead box N4. | Atonal bHLH transcription factor 7. | 0.667 |
FOXN4 | NR2E3 | ENSBTAP00000014397 | ENSBTAP00000018926 | Forkhead box N4. | Photoreceptor-specific nuclear receptor; Orphan nuclear receptor of retinal photoreceptor cells. Transcriptional factor that is an activator of rod development and repressor of cone development. Binds the promoter region of a number of rod- and cone-specific genes, including rhodopsin, M- and S-opsin and rod-specific phosphodiesterase beta subunit. Enhances rhodopsin expression. Represses M- and S-cone opsin expression. | 0.544 |
FOXN4 | POU4F2 | ENSBTAP00000014397 | ENSBTAP00000007421 | Forkhead box N4. | POU domain protein. | 0.513 |
FOXN4 | PTF1A | ENSBTAP00000014397 | ENSBTAP00000056491 | Forkhead box N4. | Pancreas associated transcription factor 1a. | 0.929 |
FOXN4 | RCVRN | ENSBTAP00000014397 | ENSBTAP00000034949 | Forkhead box N4. | Recoverin; Acts as a calcium sensor and regulates phototransduction of cone and rod photoreceptor cells. Modulates light sensitivity of cone photoreceptor in dark and dim conditions (By similarity). In response to high Ca(2+) levels induced by low light levels, prolongs RHO/rhodopsin activation in rod photoreceptor cells by binding to and inhibiting GRK1-mediated phosphorylation of RHO/rhodopsin. Plays a role in scotopic vision/enhances vision in dim light by enhancing signal transfer between rod photoreceptors and rod bipolar cells (By similarity). Improves rod photoreceptor sensitivi [...] | 0.457 |
FOXN4 | VSX1 | ENSBTAP00000014397 | ENSBTAP00000004329 | Forkhead box N4. | Visual system homeobox 1; Binds to the 37-bp core of the locus control region (LCR) of the red/green visual pigment gene cluster (By similarity). May regulate the activity of the LCR and the cone opsin genes at earlier stages of development (By similarity). Dispensable in early retinal development (By similarity). | 0.678 |
GRM6 | ARR3 | ENSBTAP00000021547 | ENSBTAP00000017088 | Glutamate metabotropic receptor 6. | Arrestin-C; May play a role in an as yet undefined retina-specific signal transduction. Could binds to photoactivated-phosphorylated red/green opsins; Belongs to the arrestin family. | 0.585 |
GRM6 | NR2E3 | ENSBTAP00000021547 | ENSBTAP00000018926 | Glutamate metabotropic receptor 6. | Photoreceptor-specific nuclear receptor; Orphan nuclear receptor of retinal photoreceptor cells. Transcriptional factor that is an activator of rod development and repressor of cone development. Binds the promoter region of a number of rod- and cone-specific genes, including rhodopsin, M- and S-opsin and rod-specific phosphodiesterase beta subunit. Enhances rhodopsin expression. Represses M- and S-cone opsin expression. | 0.540 |
GRM6 | SCGN | ENSBTAP00000021547 | ENSBTAP00000026544 | Glutamate metabotropic receptor 6. | Secretagogin. | 0.805 |
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