Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BRIX1 | LYAR | ENSBTAP00000056776 | ENSBTAP00000004763 | Ribosome biogenesis protein BRX1 homolog; Required for biogenesis of the 60S ribosomal subunit. Belongs to the BRX1 family. | Ly1 antibody reactive. | 0.832 |
BRIX1 | MRTO4 | ENSBTAP00000056776 | ENSBTAP00000015861 | Ribosome biogenesis protein BRX1 homolog; Required for biogenesis of the 60S ribosomal subunit. Belongs to the BRX1 family. | mRNA turnover protein 4 homolog; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. | 0.986 |
BRIX1 | NHP2 | ENSBTAP00000056776 | ENSBTAP00000008363 | Ribosome biogenesis protein BRX1 homolog; Required for biogenesis of the 60S ribosomal subunit. Belongs to the BRX1 family. | H/ACA ribonucleoprotein complex subunit 2; Required for ribosome biogenesis and telomere maintenance. Part of the H/ACA small nucleolar ribonucleoprotein (H/ACA snoRNP) complex, which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Each rRNA can contain up to 100 pseudouridine ('psi') residues, which may serve to stabilize the conformation of rRNAs. May also be required for correct processing or intranuclear trafficking of TERC, the RNA component of the telomerase reverse tran [...] | 0.939 |
BRIX1 | NIFK | ENSBTAP00000056776 | ENSBTAP00000031516 | Ribosome biogenesis protein BRX1 homolog; Required for biogenesis of the 60S ribosomal subunit. Belongs to the BRX1 family. | MKI67 FHA domain-interacting nucleolar phosphoprotein. | 0.999 |
BRIX1 | NOP14 | ENSBTAP00000056776 | ENSBTAP00000041827 | Ribosome biogenesis protein BRX1 homolog; Required for biogenesis of the 60S ribosomal subunit. Belongs to the BRX1 family. | NOP14 nucleolar protein. | 0.912 |
BRIX1 | PINX1 | ENSBTAP00000056776 | ENSBTAP00000000637 | Ribosome biogenesis protein BRX1 homolog; Required for biogenesis of the 60S ribosomal subunit. Belongs to the BRX1 family. | PIN2 (TERF1) interacting telomerase inhibitor 1. | 0.499 |
BRIX1 | RPF2 | ENSBTAP00000056776 | ENSBTAP00000073241 | Ribosome biogenesis protein BRX1 homolog; Required for biogenesis of the 60S ribosomal subunit. Belongs to the BRX1 family. | Ribosome production factor 2 homolog; Involved in ribosomal large subunit assembly. May regulate the localization of the 5S RNP/5S ribonucleoprotein particle to the nucleolus; Belongs to the RPF2 family. | 0.993 |
BRIX1 | RRP1B | ENSBTAP00000056776 | ENSBTAP00000023157 | Ribosome biogenesis protein BRX1 homolog; Required for biogenesis of the 60S ribosomal subunit. Belongs to the BRX1 family. | Ribosomal RNA processing 1B. | 0.971 |
BRIX1 | RRS1 | ENSBTAP00000056776 | ENSBTAP00000022217 | Ribosome biogenesis protein BRX1 homolog; Required for biogenesis of the 60S ribosomal subunit. Belongs to the BRX1 family. | Ribosome biogenesis regulatory protein homolog; Involved in ribosomal large subunit assembly. May regulate the localization of the 5S RNP/5S ribonucleoprotein particle to the nucleolus. | 0.958 |
BRIX1 | SURF6 | ENSBTAP00000056776 | ENSBTAP00000015353 | Ribosome biogenesis protein BRX1 homolog; Required for biogenesis of the 60S ribosomal subunit. Belongs to the BRX1 family. | Surfeit locus protein 6; Binds to both DNA and RNA in vitro, with a stronger binding capacity for RNA. May represent a nucleolar constitutive protein involved in ribosomal biosynthesis or assembly (By similarity). Belongs to the SURF6 family. | 0.953 |
LYAR | BRIX1 | ENSBTAP00000004763 | ENSBTAP00000056776 | Ly1 antibody reactive. | Ribosome biogenesis protein BRX1 homolog; Required for biogenesis of the 60S ribosomal subunit. Belongs to the BRX1 family. | 0.832 |
LYAR | MRTO4 | ENSBTAP00000004763 | ENSBTAP00000015861 | Ly1 antibody reactive. | mRNA turnover protein 4 homolog; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. | 0.889 |
LYAR | NHP2 | ENSBTAP00000004763 | ENSBTAP00000008363 | Ly1 antibody reactive. | H/ACA ribonucleoprotein complex subunit 2; Required for ribosome biogenesis and telomere maintenance. Part of the H/ACA small nucleolar ribonucleoprotein (H/ACA snoRNP) complex, which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Each rRNA can contain up to 100 pseudouridine ('psi') residues, which may serve to stabilize the conformation of rRNAs. May also be required for correct processing or intranuclear trafficking of TERC, the RNA component of the telomerase reverse tran [...] | 0.881 |
LYAR | NIFK | ENSBTAP00000004763 | ENSBTAP00000031516 | Ly1 antibody reactive. | MKI67 FHA domain-interacting nucleolar phosphoprotein. | 0.890 |
LYAR | NOP14 | ENSBTAP00000004763 | ENSBTAP00000041827 | Ly1 antibody reactive. | NOP14 nucleolar protein. | 0.875 |
LYAR | PINX1 | ENSBTAP00000004763 | ENSBTAP00000000637 | Ly1 antibody reactive. | PIN2 (TERF1) interacting telomerase inhibitor 1. | 0.862 |
LYAR | RPF2 | ENSBTAP00000004763 | ENSBTAP00000073241 | Ly1 antibody reactive. | Ribosome production factor 2 homolog; Involved in ribosomal large subunit assembly. May regulate the localization of the 5S RNP/5S ribonucleoprotein particle to the nucleolus; Belongs to the RPF2 family. | 0.896 |
LYAR | RRP1B | ENSBTAP00000004763 | ENSBTAP00000023157 | Ly1 antibody reactive. | Ribosomal RNA processing 1B. | 0.870 |
LYAR | RRS1 | ENSBTAP00000004763 | ENSBTAP00000022217 | Ly1 antibody reactive. | Ribosome biogenesis regulatory protein homolog; Involved in ribosomal large subunit assembly. May regulate the localization of the 5S RNP/5S ribonucleoprotein particle to the nucleolus. | 0.929 |
LYAR | SURF6 | ENSBTAP00000004763 | ENSBTAP00000015353 | Ly1 antibody reactive. | Surfeit locus protein 6; Binds to both DNA and RNA in vitro, with a stronger binding capacity for RNA. May represent a nucleolar constitutive protein involved in ribosomal biosynthesis or assembly (By similarity). Belongs to the SURF6 family. | 0.846 |
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