STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SYNDIG1LSynapse differentiation-inducing gene protein 1-like. (346 aa)    
Predicted Functional Partners:
VRTN
Vertnin; Belongs to the vertnin family.
   
  
 0.796
LRRC10B
Leucine rich repeat containing 10B.
   
  
 0.758
TMEM108
Transmembrane protein 108; Transmembrane protein required for proper cognitive functions. Involved in the development of dentate gyrus (DG) neuron circuitry, is necessary for AMPA receptors surface expression and proper excitatory postsynaptic currents of DG granule neurons. Regulates the organization and stability of the microtubule network of sensory neurons to allow axonal transport. Through the interaction with DST, mediates the docking of the dynein/dynactin motor complex to vesicle cargos for retrograde axonal transport. In hippocampal neurons, required for BDNF-dependent dendrit [...]
      
 0.731
PROX2
Prospero homeobox 2.
      
 0.721
ZNF614
Zinc finger protein 614.
      
 0.720
LARP1B
La ribonucleoprotein domain family member 1B.
      
 0.684
RIPPLY2
Ripply transcriptional repressor 2.
      
 0.684
AREL1
Apoptosis resistant E3 ubiquitin protein ligase 1.
      
 0.681
LIN52
Lin-52 DREAM MuvB core complex component.
      
 0.652
GTF2A1
General transcription factor IIA subunit 1.
      
 0.637
Your Current Organism:
Bos taurus
NCBI taxonomy Id: 9913
Other names: B. taurus, Bos bovis, Bos primigenius taurus, Bovidae sp. Adi Nefas, bovine, cattle, cow, dairy cow, domestic cattle, domestic cow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.