STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TMEM53Transmembrane protein 53. (278 aa)    
Predicted Functional Partners:
TMEM223
Transmembrane protein 223.
   
  
 0.758
ACBD6
Acyl-CoA-binding domain-containing protein 6; Binds long-chain acyl-coenzyme A molecules with a strong preference for unsaturated C18:1-CoA, lower affinity for unsaturated C20:4-CoA, and very weak affinity for saturated C16:0-CoA. Does not bind fatty acids (By similarity).
      
 0.724
ASPHD2
Aspartate beta-hydroxylase domain containing 2.
      
 0.724
B3GLCT
Beta 3-glucosyltransferase.
      
 0.716
TMUB2
Transmembrane and ubiquitin-like domain-containing protein 2.
   
  
 0.668
FRG1
FSHD region gene 1.
      
 0.652
HTRA4
Serine protease HTR4; Serine protease; Belongs to the peptidase S1C family.
      
 0.649
WDTC1
Uncharacterized protein.
   
  
 0.640
SYNRG
Synergin gamma.
      
 0.627
GEMIN4
Gem nuclear organelle associated protein 4.
      
 0.606
Your Current Organism:
Bos taurus
NCBI taxonomy Id: 9913
Other names: B. taurus, Bos bovis, Bos primigenius taurus, Bovidae sp. Adi Nefas, bovine, cattle, cow, dairy cow, domestic cattle, domestic cow
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