STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LHX1LIM homeobox 1. (406 aa)    
Predicted Functional Partners:
PAX2
Paired box 2.
   
 
 0.828
CCNK
Cyclin K; Belongs to the cyclin family.
    
   0.819
PAX8
Paired box 8.
   
 
 0.756
SIX2
SIX homeobox 2.
    
 
 0.754
WT1
WT1 transcription factor.
    
 
 0.745
EOMES
Eomesodermin.
    
 
 0.744
BCL6B
BCL6B transcription repressor.
    
 
 0.708
TLX3
Homeobox domain-containing protein.
    
 
 0.696
WNT9B
Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.
    
 
 0.694
SALL1
Spalt like transcription factor 1.
    
 
 0.689
Your Current Organism:
Bos taurus
NCBI taxonomy Id: 9913
Other names: B. taurus, Bos bovis, Bos primigenius taurus, Bovidae sp. Adi Nefas, bovine, cattle, cow, dairy cow, domestic cattle, domestic cow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.