STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSBTAP00000070642Integrase catalytic domain-containing protein. (432 aa)    
Predicted Functional Partners:
FANCM
Uncharacterized protein.
    
   0.823
ENSBTAP00000065883
SCAN box domain-containing protein.
 
  
  0.807
ZSCAN9
Zinc finger and SCAN domain containing 9.
 
  
  0.614
MED14
Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
    
 
 0.557
ZBED5
Zinc finger BED domain-containing protein 5.
 
      0.546
FAM200A
Family with sequence similarity 200 member A.
 
      0.518
ZSCAN20
Zinc finger and SCAN domain containing 20.
    
  0.501
FAM200B
Family with sequence similarity 200 member B.
 
      0.500
ZSCAN29
Zinc finger and SCAN domain containing 29.
    
  0.480
ZBED8
Protein ZBED8.
 
      0.429
Your Current Organism:
Bos taurus
NCBI taxonomy Id: 9913
Other names: B. taurus, Bos bovis, Bos primigenius taurus, Bovidae sp. Adi Nefas, bovine, cattle, cow, dairy cow, domestic cattle, domestic cow
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