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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ELAVL4ELAV-like protein; Belongs to the RRM elav family. (385 aa)    
Predicted Functional Partners:
RTRAF
RNA transcription, translation and transport factor.
   
  
 0.775
HNRNPUL2
Uncharacterized protein.
   
 
 0.772
FAM98B
Family with sequence similarity 98 member B.
      
 0.749
DHX36
DEAH-box helicase 36.
   
 0.742
FAM98A
Uncharacterized protein.
      
 0.730
DDX1
DEAD-box helicase 1.
   
 0.675
PRPF3
Pre-mRNA processing factor 3.
      
 0.672
RTCB
RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.
   
  
 0.660
HNRNPDL
Uncharacterized protein.
  
0.656
KHSRP
KH-type splicing regulatory protein.
   
 
 0.639
Your Current Organism:
Capra hircus
NCBI taxonomy Id: 9925
Other names: African dwarf goat, African dwarf goats, C. hircus, Capra aegagrus hircus, domestic goat, goat, goats
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