Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RAB43RAB43, member RAS oncogene family. (210 aa)    
Predicted Functional Partners:
LOC102174442
Uncharacterized protein.
   
  
 0.869
USP6NL
USP6 N-terminal like.
    
 0.861
HDHD5
Haloacid dehalogenase like hydrolase domain containing 5.
   
  
 0.827
USO1
USO1 vesicle transport factor.
   
 0.690
STX5
Syntaxin 5; Belongs to the syntaxin family.
    
 0.673
TRAPPC8
Trafficking protein particle complex 8.
    
 0.671
TRAPPC4
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
   
 0.665
RABGGTB
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
    
 0.656
ENSCHIP00000023336
Uncharacterized protein.
    
 0.656
TRAPPC1
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
    
 0.655
Your Current Organism:
Capra hircus
NCBI taxonomy Id: 9925
Other names: African dwarf goat, African dwarf goats, C. hircus, Capra aegagrus hircus, domestic goat, goat, goats
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