Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHIP00000001922Uncharacterized protein. (846 aa)    
Predicted Functional Partners:
ENSCHIP00000026338
Matrin-type domain-containing protein.
 
     0.943
NIPBL
Nipped-B protein.
   
 0.776
U2SURP
U2 snRNP associated SURP domain containing.
   
    0.733
SF3B1
Splicing factor 3b subunit 1.
   
   0.730
SENP6
SUMO specific peptidase 6.
   
   0.720
ZFC3H1
Zinc finger C3H1-type containing.
   
   0.558
BCLAF1
BCL2 associated transcription factor 1.
   
 0.540
BPTF
Bromodomain PHD finger transcription factor.
   
    0.530
PHF3
PHD finger protein 3.
   
    0.529
ARID4B
AT-rich interaction domain 4B.
   
 0.488
Your Current Organism:
Capra hircus
NCBI taxonomy Id: 9925
Other names: African dwarf goat, African dwarf goats, C. hircus, Capra aegagrus hircus, domestic goat, goat, goats
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