STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SNRNP27-2SNRNP27 domain-containing protein. (152 aa)    
Predicted Functional Partners:
USP39
Ubiquitin specific peptidase 39.
   
 0.917
SART1
Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.
    
 0.910
RBM42
RNA binding motif protein 42.
    
  0.734
ARL4A
ADP ribosylation factor like GTPase 4A.
      
 0.720
ARFGEF3
ARFGEF family member 3.
      
 0.720
SLC25A24
Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.
      
 0.698
FBXL2
F-box and leucine rich repeat protein 2.
      
 0.679
PTPN7
Protein tyrosine phosphatase non-receptor type 7.
      
 0.678
LSM7
LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.
    
 0.631
ABCA12
ATP binding cassette subfamily A member 12.
      
 0.613
Your Current Organism:
Capra hircus
NCBI taxonomy Id: 9925
Other names: African dwarf goat, African dwarf goats, C. hircus, Capra aegagrus hircus, domestic goat, goat, goats
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