Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
STM0016Hypothetical protein. (177 aa)    
Predicted Functional Partners:
STM0017
Similar to E. coli putative sensory transducer (AAC75886.1); Blastp hit to AAC75886.1 (269 aa), 30% identity in aa 3 - 109.
  
  
 0.988
STM0014
Similar to E. coli putative transcriptional regulator LYSR-type (AAC73704.1); Blastp hit to AAC73704.1 (300 aa), 25% identity in aa 8 - 296; Belongs to the LysR transcriptional regulatory family.
  
  
 0.971
STM0018
Putative exochitinase.
 
  
 0.971
STM0015
Putative bacteriophage protein.
   
  
 0.959
STM0031
Putative transcriptional regulator MarT (gi|4324612).
  
  
 0.953
STM0029
Putative transcriptional regulator MarT (gi|4324612).
  
  
 0.952
marT
Pathogenicity island encoded protein: SPI3; putative transcriptional regulator MarT (gi|4324612).
   
  
 0.710
STM3605
Putative phage endolysin.
   
  
 0.682
STM1871
Similar to E. coli prophage e14 integrase (AAC74224.1); Blastp hit to AAC74224.1 (375 aa), 39% identity in aa 78 - 366; Belongs to the 'phage' integrase family.
  
     0.609
STM2589
Gifsy-1 prophage protein; Similar to host specificity protein-J in phage lambda.
 
    0.491
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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