bcfE protein (Salmonella enterica Typhimurium)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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Score

bcfE

Fimbrial subunit (gi|4959515). (181 aa)

Predicted Functional Partners:

bcfC

0.807

bcfG

0.802

bcfB

0.801

bcfD

0.782

bcfF

0.778

bcfH

0.627

bcfA

0.542

leuD

0.455

Your Current Organism:

Salmonella enterica Typhimurium

NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
bcfA	bcfB	STM0021	STM0022	Fimbrial subunit (gi\|4959511).	Fimbrial chaperone (gi\|4959512).	0.916
bcfA	bcfC	STM0021	STM0023	Fimbrial subunit (gi\|4959511).	Fimbrial usher; Bovine colonization factor BcfC (gi\|4530570).	0.967
bcfA	bcfD	STM0021	STM0024	Fimbrial subunit (gi\|4959511).	Fimbrial subunit (gi\|4959514).	0.675
bcfA	bcfE	STM0021	STM0025	Fimbrial subunit (gi\|4959511).	Fimbrial subunit (gi\|4959515).	0.542
bcfA	bcfF	STM0021	STM0026	Fimbrial subunit (gi\|4959511).	Fimbrial subunit (gi\|4959516).	0.659
bcfA	bcfG	STM0021	STM0027	Fimbrial subunit (gi\|4959511).	Fimbrial chaperone (gi\|4959517).	0.954
bcfA	bcfH	STM0021	STM0028	Fimbrial subunit (gi\|4959511).	Putative thiol-disulfide isomerase; Unknown (gi\|6650097).	0.876
bcfB	bcfA	STM0022	STM0021	Fimbrial chaperone (gi\|4959512).	Fimbrial subunit (gi\|4959511).	0.916
bcfB	bcfC	STM0022	STM0023	Fimbrial chaperone (gi\|4959512).	Fimbrial usher; Bovine colonization factor BcfC (gi\|4530570).	0.962
bcfB	bcfD	STM0022	STM0024	Fimbrial chaperone (gi\|4959512).	Fimbrial subunit (gi\|4959514).	0.811
bcfB	bcfE	STM0022	STM0025	Fimbrial chaperone (gi\|4959512).	Fimbrial subunit (gi\|4959515).	0.801
bcfB	bcfF	STM0022	STM0026	Fimbrial chaperone (gi\|4959512).	Fimbrial subunit (gi\|4959516).	0.958
bcfB	bcfG	STM0022	STM0027	Fimbrial chaperone (gi\|4959512).	Fimbrial chaperone (gi\|4959517).	0.868
bcfB	bcfH	STM0022	STM0028	Fimbrial chaperone (gi\|4959512).	Putative thiol-disulfide isomerase; Unknown (gi\|6650097).	0.650
bcfC	bcfA	STM0023	STM0021	Fimbrial usher; Bovine colonization factor BcfC (gi\|4530570).	Fimbrial subunit (gi\|4959511).	0.967
bcfC	bcfB	STM0023	STM0022	Fimbrial usher; Bovine colonization factor BcfC (gi\|4530570).	Fimbrial chaperone (gi\|4959512).	0.962
bcfC	bcfD	STM0023	STM0024	Fimbrial usher; Bovine colonization factor BcfC (gi\|4530570).	Fimbrial subunit (gi\|4959514).	0.832
bcfC	bcfE	STM0023	STM0025	Fimbrial usher; Bovine colonization factor BcfC (gi\|4530570).	Fimbrial subunit (gi\|4959515).	0.807
bcfC	bcfF	STM0023	STM0026	Fimbrial usher; Bovine colonization factor BcfC (gi\|4530570).	Fimbrial subunit (gi\|4959516).	0.957
bcfC	bcfG	STM0023	STM0027	Fimbrial usher; Bovine colonization factor BcfC (gi\|4530570).	Fimbrial chaperone (gi\|4959517).	0.986

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