Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
STM0041Putative glycosyl hydrolase; Similar to E. coli orf, hypothetical protein (AAC76680.1); Blastp hit to AAC76680.1 (772 aa), 25% identity in aa 116 - 547, 27% identity in aa 549 - 665, 25% identity in aa 84 - 149; Belongs to the glycosyl hydrolase 31 family. (679 aa)    
Predicted Functional Partners:
STM2503
Putative diguanylate cyclase; Similar to E. coli putative cytochrome C-type biogenesis protein (AAC75556.1); Blastp hit to AAC75556.1 (747 aa), 73% identity in aa 1 - 733.
   
  
 0.952
STM0018
Putative exochitinase.
   
  
 0.910
yicL
Putative permease; Integral membrane protein; hypothetical protein in selC 3'region. (SW:YICL_SALTY).
   
  
 0.856
citP
Putative citrate-sodium symport; Uptake of citrate across the boundary membrane with the concomitant uptake of a sodium ion (symport system); Belongs to the sodium:citrate (SCF) symporter family.
      
 0.818
STM3679
Putative cytoplasmic protein.
 
    0.744
STM0042
Putative sodium galactoside symporter; Similar to E. coli putative permease (AAC76681.1); Blastp hit to AAC76681.1 (479 aa), 29% identity in aa 22 - 457.
  
    0.725
ygjU
Putative dicarboxylate permease; Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system). Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
      
 0.700
yhiH
Putative ABC-type multidrug transport system; ATPase component; Permease component of an ABC-transporter; similar to E. coli putative ATP-binding component of a transport system, fragment 1 (AAC76511.1); Blastp hit to AAC76511.1 (894 aa), 89% identity in aa 1 - 894.
   
  
 0.648
bglX
Periplasmic beta-D-glucoside glucohydrolase; Periplasmic beta-glucosidase precursor. (SW:BGLX_SALTY); Belongs to the glycosyl hydrolase 3 family.
 
   
 0.587
yaaU
Similar to E. coli putative transport protein (AAC73156.1); Blastp hit to AAC73156.1 (443 aa), 86% identity in aa 1 - 439.
   
  
 0.585
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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