STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
stfAMajor fimbrial subunit StfA (gi|3747029). (186 aa)    
Predicted Functional Partners:
stfC
Outer membrane usher protein StfC (gi|3747030).
  
 
 0.932
stfE
Minor fimbrial subunit StfE (gi|3747032).
  
  
 0.864
stcA
Similar to E. coli putative fimbrial-like protein (AAC75172.1); Blastp hit to AAC75172.1 (180 aa), 33% identity in aa 1 - 180.
  
  
 0.855
stiA
Putative fimbrial subunit; Similar to E. coli major type 1 subunit fimbrin (pilin) (AAC77270.1); Blastp hit to AAC77270.1 (182 aa), 37% identity in aa 1 - 181.
   
  
 0.813
stbA
Putative fimbriae; Similar to E. coli major type 1 subunit fimbrin (pilin) (AAC77270.1); Blastp hit to AAC77270.1 (182 aa), 28% identity in aa 1 - 182.
  
  
 0.810
stfD
Periplasmic fimbrial chaperone StfD (gi|3747031).
  
 
 0.802
stbB
Putative fimbriae; Similar to E. coli probable pilin chaperone similar to PapD (AAC73251.1); Blastp hit to AAC73251.1 (246 aa), 40% identity in aa 1 - 240.
  
 
 0.801
bcfH
Putative thiol-disulfide isomerase; Unknown (gi|6650097).
      
 0.769
bcfG
Fimbrial chaperone (gi|4959517).
    
 
 0.749
yaeB
Putative regulator; Similar to E. coli orf, hypothetical protein (AAC73306.1); Blastp hit to AAC73306.1 (235 aa), 89% identity in aa 1 - 235.
      
 0.670
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.