STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
stfEMinor fimbrial subunit StfE (gi|3747032). (170 aa)    
Predicted Functional Partners:
stfC
Outer membrane usher protein StfC (gi|3747030).
  
 
 0.940
stfA
Major fimbrial subunit StfA (gi|3747029).
  
  
 0.901
stfD
Periplasmic fimbrial chaperone StfD (gi|3747031).
  
   0.891
yadU
Putative outer membrane protein; Hypothetical 30.2 da protein in stfG 3'region precursor. (SW:YADU_SALTY); To E.coli YfcO.
  
  
 0.824
stfG
Putative adhesin; minor fimbrial subunit StfG (gi|3747034).
  
  
 0.823
stcB
Similar to E. coli putative chaperone (AAC75171.1); Blastp hit to AAC75171.1 (239 aa), 64% identity in aa 16 - 239.
  
 
 0.812
stbB
Putative fimbriae; Similar to E. coli probable pilin chaperone similar to PapD (AAC73251.1); Blastp hit to AAC73251.1 (246 aa), 40% identity in aa 1 - 240.
  
 
 0.798
stfF
Minor fimbrial subunit StfF (gi|3747033).
  
   
0.796
yaiV
Putative inner membrane protein; Involved in oxidative stress resistance.
      
 0.766
stbA
Putative fimbriae; Similar to E. coli major type 1 subunit fimbrin (pilin) (AAC77270.1); Blastp hit to AAC77270.1 (182 aa), 28% identity in aa 1 - 182.
      
 0.577
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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