STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
stfFMinor fimbrial subunit StfF (gi|3747033). (158 aa)    
Predicted Functional Partners:
sthE
Putative major fimbrial subunit.
     
 0.901
stiC
Putative fimbrial usher; Similar to E. coli putative outer membrane protein (AAC76178.1); Blastp hit to AAC76178.1 (838 aa), 39% identity in aa 20 - 558, 34% identity in aa 493 - 837.
   
 
 0.869
stbC
Putative fimbriae; Similar to E. coli outer membrane protein; export and assembly of type 1 fimbriae, interrupted (AAC77273.1); Blastp hit to AAC77273.1 (878 aa), 30% identity in aa 30 - 870.
   
 
 0.865
stfD
Periplasmic fimbrial chaperone StfD (gi|3747031).
  
   0.841
stfC
Outer membrane usher protein StfC (gi|3747030).
  
   0.831
stfG
Putative adhesin; minor fimbrial subunit StfG (gi|3747034).
  
  
 0.814
stfE
Minor fimbrial subunit StfE (gi|3747032).
  
   
0.796
yadU
Putative outer membrane protein; Hypothetical 30.2 da protein in stfG 3'region precursor. (SW:YADU_SALTY); To E.coli YfcO.
  
  
 0.793
pqaA
PhoPQ-regulated protein.
      
 0.699
sifB
Salmonella translocated effector: translocated by SPI-2; Effector proteins function to alter host cell physiology and promote bacterial survival in host tissues; Belongs to the Sif family.
      
 0.675
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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