STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cdaRPutative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC73273.1); Blastp hit to AAC73273.1 (391 aa), 95% identity in aa 7 - 391. (385 aa)    
Predicted Functional Partners:
argE
Acetylornithine deacetylase; Displays a broad specificity and can also deacylate substrates such as acetylarginine, acetylhistidine or acetylglutamate semialdehyde.
      
 0.832
STM3521
Putative ribonucleoprotein related-protein.
      
 0.803
vapB
Putative cytoplasmic protein; Antitoxin component of a type II toxin-antitoxin (TA) system. Upon expression in E.coli neutralizes the effect of cognate toxin VapC.
      
 0.619
rfbV
Abequosyltransferase; Catalyzes the transfer of CDP-abequose on D-mannosyl-L- rhamnosyl-D-galactose-1-diphospholipid to yield D-abequosyl-D-mannosyl- rhamnosyl-D-galactose-1-diphospholipid.
      
 0.611
pgpB
Similar to E. coli non-essential phosphatidylglycerophosphate phosphatase, membrane bound (AAC74360.1); Blastp hit to AAC74360.1 (254 aa), 82% identity in aa 1 - 254.
  
     0.596
lldR
Putative transcriptional GntR family regulator for lct operon; Similar to E. coli transcriptional regulator (AAC76628.1); Blastp hit to AAC76628.1 (258 aa), 86% identity in aa 1 - 258.
   
  
 0.578
fucR
DeoR family; similar to E. coli positive regulator of the fuc operon (AAC75847.1); Blastp hit to AAC75847.1 (243 aa), 88% identity in aa 1 - 235.
      
 0.577
STM3141
Molybdenum-binding periplasmic protein.
  
     0.550
xylR
Xylose operon regulatory protein; AraC/XylS family; similar to E. coli putative regulator of xyl operon (AAC76593.1); Blastp hit to AAC76593.1 (392 aa), 92% identity in aa 1 - 392.
  
  
 0.535
galS
GalR/LacI family transcriptional repressor of mgl operon; Repressor of the mgl operon. Binds galactose and D-fucose as inducers. GalS binds to an operator DNA sequence within its own coding sequence (By similarity).
   
  
 0.516
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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