Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
STM0266Putative cytoplasmic protein. (351 aa)    
Predicted Functional Partners:
STM0267
Putative cytoplasmic protein.
 
  
 0.998
STM0269
Putative cytoplasmic protein.
 
  
 0.972
STM0268
Putative cytoplasmic protein.
 
  
 0.969
STM0270
Putative cytoplasmic protein.
 
  
 0.967
STM0289
Putative cytoplasmic protein.
 
  
 0.967
STM0298
Putative integrase core domain protein; Similar to E. coli orf, hypothetical protein (AAC73370.1); Blastp hit to AAC73370.1 (384 aa), 28% identity in aa 221 - 295.
      
 0.954
STM0282
Similar to E. coli putative outer membrane protein (AAC76576.1); Blastp hit to AAC76576.1 (219 aa), 44% identity in aa 145 - 214.
 
  
 0.933
STM0272
Putative ATPase with chaperone activity; Homolog of Yersinia clpB; similar to E. coli ATP-binding component of serine protease (AAC73969.1); Blastp hit to AAC73969.1 (758 aa), 42% identity in aa 150 - 449, 40% identity in aa 421 - 685, 32% identity in aa 30 - 74; Belongs to the ClpA/ClpB family.
 
  
 0.919
STM0274
Putative cytoplasmic protein.
 
  
 0.915
STM0273
Putative cytoplasmic protein.
 
  
 0.908
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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