STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
STM0277Putative cytoplasmic protein. (161 aa)    
Predicted Functional Partners:
STM0278
Putative periplasmic protein.
  
 
 0.999
STM0276
Putative cytoplasmic protein.
  
  
 0.916
STM2606
Gifsy-1 prophage protein; Similar to head-tail preconnector gp4 of phage 21.
  
  
 0.899
STM0291
Putative RHS-family protein; Similar to E. coli rhsD protein in rhs element (AAC73599.1); Blastp hit to AAC73599.1 (1426 aa), 27% identity in aa 315 - 985, 46% identity in aa 1151 - 1261, 25% identity in aa 297 - 788, 24% identity in aa 346 - 870, 22-1073758628dentity in aa 465 - 904, 26% identity in aa 317 - 724, 32-1073758654dentity in aa 4 - 143, 24% identity in aa 232 - 605, 21% identity in aa 562 - 970, 23% identity in aa 318 - 755, 32% identity in aa 974 - 1076, 26% identity in aa 935 - 1051, 22% identity in aa 358 - 540, 37% identity in aa 1 - 32, 31-1073758588dentity in aa 1041 [...]
  
  
 0.883
STM0293
Putative cytoplasmic protein.
   
  
 0.861
STM0292
Putative RHS-family protein; Similar to E. coli rhsE protein in rhs element (AAC74538.1); Blastp hit to AAC74538.1 (682 aa), 44% identity in aa 426 - 541, 28% identity in aa 273 - 300.
  
  
 0.857
STM0289
Putative cytoplasmic protein.
     
 0.795
STM0279
Putative cytoplasmic protein.
  
    0.505
STM0280
Putative outer membrane lipoprotein.
  
    0.426
STM0282
Similar to E. coli putative outer membrane protein (AAC76576.1); Blastp hit to AAC76576.1 (219 aa), 44% identity in aa 145 - 214.
  
    0.416
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.