Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
STM0344Putative response regulator. (247 aa)    
Predicted Functional Partners:
STM0345
Putative inner membrane protein; Unknown (gi|6707277).
  
  
 0.981
STM1926
Putative cytoplasmic protein.
      
 0.896
STM0342
Putative periplasmic protein; Unknown (gi|6707277).
   
  
 0.866
STM1868A
Lytic enzyme.
      
 0.858
ybfA
Putative periplasmic protein; Similar to E. coli orf, hypothetical protein (AAC73793.1); Blastp hit to AAC73793.1 (68 aa), 82% identity in aa 1 - 68.
      
 0.853
fidL
Putative inner membrane protein; Pathogenicity island encoded protein: SPI3; FidL (gi|4324611).
  
  
 0.749
yceP
Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC74144.1); Blastp hit to AAC74144.1 (84 aa), 94% identity in aa 1 - 84.
      
 0.726
yjbE
Putative outer membrane protein; Similar to E. coli orf, hypothetical protein (AAC76996.1); Blastp hit to AAC76996.1 (80 aa), 96% identity in aa 1 - 80.
      
 0.679
yhcN
Putative outer membrane protein; Similar to E. coli orf, hypothetical protein (AAC76270.1); Blastp hit to AAC76270.1 (104 aa), 79% identity in aa 18 - 104.
      
 0.674
yjgD
Putative cytoplasmic protein; Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome.
      
 0.671
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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