STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yahOPutative periplasmic protein; Similar to E. coli orf, hypothetical protein (AAC73432.1); Blastp hit to AAC73432.1 (91 aa), 72% identity in aa 1 - 91. (91 aa)    
Predicted Functional Partners:
yehY
Putative ABC-type proline/glycine betaine transport system, permease component; Similar to E. coli putative transport system permease protein (AAC75191.1); Blastp hit to AAC75191.1 (385 aa), 76% identity in aa 6 - 385.
      
 0.892
ygaU
Putative LysM domain protein; Similar to E. coli orf, hypothetical protein (AAC75712.1); Blastp hit to AAC75712.1 (149 aa), 93% identity in aa 1 - 149.
   
  
 0.890
yeaG
Putative Ser protein kinase; Similar to E. coli orf, hypothetical protein (AAC74853.1); Blastp hit to AAC74853.1 (644 aa), 98% identity in aa 1 - 644.
   
  
 0.859
yccJ
Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC74088.1); Blastp hit to AAC74088.1 (75 aa), 92% identity in aa 1 - 75.
   
  
 0.814
STM0565
Putative periplasmic protein; Similar to E. coli orf, hypothetical protein (AAC73406.1); Blastp hit to AAC73406.1 (83 aa), 53% identity in aa 6 - 83.
      
 0.800
STM3362
Putative periplasmic protein; Similar to E. coli orf, hypothetical protein (AAC76270.1); Blastp hit to AAC76270.1 (104 aa), 53% identity in aa 18 - 104.
   
  
 0.800
ymdF
Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC74341.1); Blastp hit to AAC74341.1 (78 aa), 87% identity in aa 20 - 73.
   
  
 0.786
yncC
Putative gntR family regulatory protein; Similar to E. coli orf, hypothetical protein (AAC74532.1); Blastp hit to AAC74532.1 (240 aa), 58% identity in aa 20 - 238.
   
  
 0.780
yhjY
Similar to E. coli putative lipase (AAC76572.1); Blastp hit to AAC76572.1 (234 aa), 72% identity in aa 3 - 234.
      
 0.766
ybaY
Similar to E. coli glycoprotein/polysaccharide metabolism (AAC73556.1); Blastp hit to AAC73556.1 (190 aa), 88% identity in aa 1 - 190.
   
  
 0.764
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.