STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
STM0381Putative inner membrane protein. (237 aa)    
Predicted Functional Partners:
srfC
ssrAB activated gene; Predicted coiled-coil structure; SrfC (gi|8347260).
  
     0.663
yaiU
Flagellar protein; Similar to 3rd module of ATP-binding components of transporters; similar to E. coli putative flagellin structural protein (AAC73477.1); Blastp hit to AAC73477.1 (467 aa), 91% identity in aa 1 - 467.
  
     0.624
ddlA
D-alanine-D-alanine ligase A; Cell wall formation.
       0.559
srfA
ssrAB activated gene; SrfA (gi|8347258).
  
     0.534
STM0898
Predicted Fels-1 prophage transcriptional regulator.
  
     0.511
STM2552
Putative periplasmic or exported protein.
  
    0.492
STM0382
Similar to E. coli putative transport protein (AAC74137.1); Blastp hit to AAC74137.1 (408 aa), 60% identity in aa 11 - 405.
       0.491
ecnR
Putative luxR family bacterial regulatory protein.
  
    0.487
srfB
ssrAB activated gene; SrfB (gi|8347259).
  
     0.470
yfdC
Similar to E. coli putative transport (AAC75407.1); Blastp hit to AAC75407.1 (310 aa), 87% identity in aa 1 - 304.
  
    0.436
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.