Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ybaNSimilar to E. coli putative gene 58 (AAC73570.1); Blastp hit to AAC73570.1 (125 aa), 84% identity in aa 1 - 124. (125 aa)    
Predicted Functional Partners:
ycgL
Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC74263.1); Blastp hit to AAC74263.1 (108 aa), 84% identity in aa 6 - 108.
      
 0.727
ydiN
Similar to E. coli putative amino acid/amine transport protein (AAC74761.1); Blastp hit to AAC74761.1 (423 aa), 85% identity in aa 3 - 412.
      
 0.723
ygiN
Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC76065.1); Blastp hit to AAC76065.1 (104 aa), 90% identity in aa 1 - 104.
      
 0.678
yneJ
Similar to E. coli putative transcriptional regulator LYSR-type (AAC74599.1); Blastp hit to AAC74599.1 (293 aa), 84% identity in aa 1 - 283; Belongs to the LysR transcriptional regulatory family.
   
  
 0.653
ybaO
Similar to E. coli putative LRP-like transcriptional regulator (AAC73550.1); Blastp hit to AAC73550.1 (181 aa), 95% identity in aa 30 - 181.
   
  
 0.647
priC
Similar to E. coli primosomal replication protein N'' (AAC73569.1); Blastp hit to AAC73569.1 (175 aa), 73% identity in aa 5 - 175.
  
    0.646
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
  
    0.598
yejF
Contains duplicated ATPase domain; similar to E. coli putative ATP-binding component of a transport system (AAC75241.1); Blastp hit to AAC75241.1 (529 aa), 86% identity in aa 1 - 529; Belongs to the ABC transporter superfamily.
     
 0.591
ybaM
Putative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC73568.1); Blastp hit to AAC73568.1 (53 aa), 80% identity in aa 1 - 49.
       0.551
ybeF
Similar to E. coli putative transcriptional regulator LYSR-type (AAC73730.1); Blastp hit to AAC73730.1 (266 aa), 68% identity in aa 1 - 266; Belongs to the LysR transcriptional regulatory family.
      
 0.546
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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