ybaB protein (Salmonella enterica Typhimurium)

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ybaB

Putative cytoplasmic protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. (109 aa)

Predicted Functional Partners:

recR

0.997

dnaX

0.961

phoL

0.771

yhaL

0.766

ybeD

0.752

yhbC

0.748

pal

0.740

ycaR

0.702

yheN

0.675

yheM

0.672

Your Current Organism:

Salmonella enterica Typhimurium

NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
dnaX	recR	STM0484	STM0486	DNA polymerase III, tau and gamma subunits; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity (By similarity). [Isoform gamma]: chain seems to interact with the delta subunit to transfer the beta subunit on the DNA; Belongs to the DnaX/STICHEL family.	Putative recombination protein, gap repair; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.	0.940
dnaX	ybaB	STM0484	STM0485	DNA polymerase III, tau and gamma subunits; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity (By similarity). [Isoform gamma]: chain seems to interact with the delta subunit to transfer the beta subunit on the DNA; Belongs to the DnaX/STICHEL family.	Putative cytoplasmic protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.	0.961
pal	ybaB	STM0749	STM0485	Tol protein required for outer membrane integrity; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.	Putative cytoplasmic protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.	0.740
pal	yhbC	STM0749	STM3288	Tol protein required for outer membrane integrity; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.	Putative cytoplasmic protein; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family.	0.591
phoL	ybaB	STM0669	STM0485	Putative phosphate starvation-inducible protein, ATP-binding; Similar to E. coli putative ATP-binding protein in pho regulon (AAC73761.1); Blastp hit to AAC73761.1 (359 aa), 96% identity in aa 1 - 359.	Putative cytoplasmic protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.	0.771
phoL	ybeD	STM0669	STM0636	Putative phosphate starvation-inducible protein, ATP-binding; Similar to E. coli putative ATP-binding protein in pho regulon (AAC73761.1); Blastp hit to AAC73761.1 (359 aa), 96% identity in aa 1 - 359.	Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC73732.1); Blastp hit to AAC73732.1 (87 aa), 97% identity in aa 1 - 87; Belongs to the UPF0250 family.	0.924
phoL	ycaR	STM0669	STM0987	Putative phosphate starvation-inducible protein, ATP-binding; Similar to E. coli putative ATP-binding protein in pho regulon (AAC73761.1); Blastp hit to AAC73761.1 (359 aa), 96% identity in aa 1 - 359.	Putative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC74003.1); Blastp hit to AAC74003.1 (60 aa), 93% identity in aa 1 - 60; Belongs to the UPF0434 family.	0.837
phoL	yhaL	STM0669	STM3237	Putative phosphate starvation-inducible protein, ATP-binding; Similar to E. coli putative ATP-binding protein in pho regulon (AAC73761.1); Blastp hit to AAC73761.1 (359 aa), 96% identity in aa 1 - 359.	Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC76142.1); Blastp hit to AAC76142.1 (56 aa), 70% identity in aa 3 - 56.	0.897
phoL	yhbC	STM0669	STM3288	Putative phosphate starvation-inducible protein, ATP-binding; Similar to E. coli putative ATP-binding protein in pho regulon (AAC73761.1); Blastp hit to AAC73761.1 (359 aa), 96% identity in aa 1 - 359.	Putative cytoplasmic protein; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family.	0.411
phoL	yheM	STM0669	STM3450	Putative phosphate starvation-inducible protein, ATP-binding; Similar to E. coli putative ATP-binding protein in pho regulon (AAC73761.1); Blastp hit to AAC73761.1 (359 aa), 96% identity in aa 1 - 359.	Putative oxidation of intracellular sulfur; Part of a sulfur-relay system required for 2-thiolation of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions.	0.843
phoL	yheN	STM0669	STM3451	Putative phosphate starvation-inducible protein, ATP-binding; Similar to E. coli putative ATP-binding protein in pho regulon (AAC73761.1); Blastp hit to AAC73761.1 (359 aa), 96% identity in aa 1 - 359.	Putative ACR involved in intracellular sulfur reduction; Part of a sulfur-relay system required for 2-thiolation of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE.	0.820
recR	dnaX	STM0486	STM0484	Putative recombination protein, gap repair; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.	DNA polymerase III, tau and gamma subunits; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity (By similarity). [Isoform gamma]: chain seems to interact with the delta subunit to transfer the beta subunit on the DNA; Belongs to the DnaX/STICHEL family.	0.940
recR	ybaB	STM0486	STM0485	Putative recombination protein, gap repair; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.	Putative cytoplasmic protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.	0.997
ybaB	dnaX	STM0485	STM0484	Putative cytoplasmic protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.	DNA polymerase III, tau and gamma subunits; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity (By similarity). [Isoform gamma]: chain seems to interact with the delta subunit to transfer the beta subunit on the DNA; Belongs to the DnaX/STICHEL family.	0.961
ybaB	pal	STM0485	STM0749	Putative cytoplasmic protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.	Tol protein required for outer membrane integrity; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.	0.740
ybaB	phoL	STM0485	STM0669	Putative cytoplasmic protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.	Putative phosphate starvation-inducible protein, ATP-binding; Similar to E. coli putative ATP-binding protein in pho regulon (AAC73761.1); Blastp hit to AAC73761.1 (359 aa), 96% identity in aa 1 - 359.	0.771
ybaB	recR	STM0485	STM0486	Putative cytoplasmic protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.	Putative recombination protein, gap repair; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.	0.997
ybaB	ybeD	STM0485	STM0636	Putative cytoplasmic protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.	Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC73732.1); Blastp hit to AAC73732.1 (87 aa), 97% identity in aa 1 - 87; Belongs to the UPF0250 family.	0.752
ybaB	ycaR	STM0485	STM0987	Putative cytoplasmic protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.	Putative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC74003.1); Blastp hit to AAC74003.1 (60 aa), 93% identity in aa 1 - 60; Belongs to the UPF0434 family.	0.702
ybaB	yhaL	STM0485	STM3237	Putative cytoplasmic protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.	Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC76142.1); Blastp hit to AAC76142.1 (56 aa), 70% identity in aa 3 - 56.	0.766

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