Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ybbMSimilar to E. coli putative metal resistance protein (AAC73593.1); Blastp hit to AAC73593.1 (268 aa), 88% identity in aa 10 - 267. (259 aa)    
Predicted Functional Partners:
ybbL
Putative ABC-type sugar/spermidine/putrescine transport system, ATPase component; Similar to E. coli putative ATP-binding component of a transport system (AAC73592.1); Blastp hit to AAC73592.1 (225 aa), 74% identity in aa 1 - 225.
  
 0.996
ybbK
Putative inner membrane protein; Similar to E. coli putative protease (AAC73591.1); Blastp hit to AAC73591.1 (305 aa), 95% identity in aa 1 - 302.
     
 0.868
yiaH
Putative inner membrane protein; Responsible for the incorporation of O-acetyl groups into the enterobacterial common antigen (ECA) trisaccharide repeat units.
      
 0.700
ybbO
Similar to E. coli putative oxidoreductase (AAC73595.1); Blastp hit to AAC73595.1 (269 aa), 90% identity in aa 14 - 268.
     
 0.672
ybbJ
Putative membrane protein implicated in regulation of membrane protease activity; Similar to E. coli orf, hypothetical protein (AAC73590.1); Blastp hit to AAC73590.1 (151 aa), 85% identity in aa 3 - 149.
     
 0.559
ynfM
Similar to E. coli putative transport protein (AAC74668.1); Blastp hit to AAC74668.1 (417 aa), 91% identity in aa 1 - 417.
      
 0.478
yfhF
Putative regulator; Is able to transfer iron-sulfur clusters to apo-ferredoxin. Multiple cycles of [2Fe2S] cluster formation and transfer are observed, suggesting that IscA acts catalytically. Recruits intracellular free iron so as to provide iron for the assembly of transient iron-sulfur cluster in IscU in the presence of IscS, L-cysteine and the thioredoxin reductase system TrxA/TrxB.
      
 0.424
cyaY
Putative frataxin family transport protein; Involved in iron-sulfur (Fe-S) cluster assembly. May act as a regulator of Fe-S biogenesis.
      
 0.412
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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