Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ybcJPutative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC73630.1); Blastp hit to AAC73630.1 (77 aa), 92% identity in aa 8 - 77. (70 aa)    
Predicted Functional Partners:
yjgA
Similar to E. coli putative alpha helix protein (AAC77191.1); Blastp hit to AAC77191.1 (183 aa), 95% identity in aa 1 - 183; Belongs to the UPF0307 family.
  
  
 0.892
yibL
Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC76626.1); Blastp hit to AAC76626.1 (120 aa), 90% identity in aa 1 - 120.
    
 
 0.872
yeeX
Similar to E. coli putative alpha helix protein (AAC75068.1); Blastp hit to AAC75068.1 (131 aa), 93% identity in aa 23 - 131; Belongs to the UPF0265 family.
      
 0.860
yhgF
Putative RNase R; Similar to E. coli orf, hypothetical protein (AAC76432.1); Blastp hit to AAC76432.1 (740 aa), 94% identity in aa 1 - 740.
      
 0.860
yihI
Putative cytoplasmic protein; A GTPase-activating protein (GAP) that modifies Der/EngA GTPase function. May play a role in ribosome biogenesis. Belongs to the YihI family.
      
 0.856
folD
5,10-methylene-tetrahydrofolate dehydrogenase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.
  
    0.827
yhbY
Putative RNA-binding protein; Contains KH domain; similar to E. coli orf, hypothetical protein (AAC76212.1); Blastp hit to AAC76212.1 (97 aa), 95% identity in aa 1 - 97.
   
  
 0.774
yceD
Putative metal-binding protein; Plays a role in synthesis, processing and/or stability of 23S rRNA; Belongs to the DUF177 domain family.
  
  
 0.727
yceF
Putative inhibitor of septum formation; Nucleoside triphosphate pyrophosphatase that hydrolyzes 7- methyl-GTP (m(7)GTP). May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
      
 0.725
yhdE
Putative inhibitor of septum formation; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
   
  
 0.722
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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