STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybdFPutative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC73680.1); Blastp hit to AAC73680.1 (122 aa), 75% identity in aa 1 - 121. (122 aa)    
Predicted Functional Partners:
ybdK
Putative cytoplasmic protein; ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity.
      
 0.893
ligT
2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family.
      
 0.839
STM0580
Putative regulatory protein.
  
    0.823
ybdJ
Putative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC73681.1); Blastp hit to AAC73681.1 (82 aa), 85% identity in aa 1 - 82.
      
 0.803
nfnB
Dihydropteridine reductase; Reduction of a variety of nitroaromatic compounds using NADH (and to lesser extent NADPH) as source of reducing equivalents; two electrons are transferred. Capable of reducing nitrofurazone (By similarity).
     
 0.798
sfsA
Regulator for maltose metabolism; Binds to DNA non-specifically. Could be a regulatory factor involved in maltose metabolism.
      
 0.716
yadB
Putative glutamyl t-RNA synthetase; Catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp). Glutamate is transferred on the 2-amino-5-(4,5-dihydroxy-2- cyclopenten-1-yl) moiety of the queuosine in the wobble position of the QUC anticodon; Belongs to the class-I aminoacyl-tRNA synthetase family. GluQ subfamily.
      
 0.700
folK
7, 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, PPPK; Similar to E. coli 7,8-dihydro-6-hydroxymethylpterin- pyrophosphokinase (AAC73253.1); Blastp hit to AAC73253.1 (159 aa), 87% identity in aa 1 - 148.
      
 0.576
yccF
Putative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC74047.1); Blastp hit to AAC74047.1 (148 aa), 92% identity in aa 1 - 148.
      
 0.573
yccS
Putative efflux (PET) family transporter; Similar to E. coli orf, hypothetical protein (AAC74046.1); Blastp hit to AAC74046.1 (720 aa), 88% identity in aa 4 - 710.
      
 0.501
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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