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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
STM0660Putative cytoplasmic protein. (412 aa)    
Predicted Functional Partners:
caiC
crotonobetaine/carnitine-CoA ligase; Catalyzes the transfer of CoA to carnitine, generating the initial carnitinyl-CoA needed for the CaiB reaction cycle. Also has activity toward crotonobetaine and gamma-butyrobetaine.
      
 0.891
ratA
Putative outer membrane protein; RatA (gi|4583529).
      
 0.837
citT
DASS family, citrate:succinate transport (antiport) protein; Similar to E. coli putative a membrane protein (AAC73713.1); Blastp hit to AAC73713.1 (487 aa), 94% identity in aa 1 - 487.
      
 0.802
STM2589
Gifsy-1 prophage protein; Similar to host specificity protein-J in phage lambda.
      
 0.765
STM2732
Fels-2 prophage protein; Similar to protein in phage 186.
      
 0.765
safA
Putative outer membrane protein.
      
 0.762
STM4198
Putative cytoplasmic protein.
      
 0.762
ybeK
Putative purine nucleoside hydrolase; Hydrolyzes cytidine or uridine to ribose and cytosine or uracil, respectively.
  
    0.710
cpsG
Phosphomannomutase; Involved in the biosynthesis of the capsular polysaccharide colanic acid; Belongs to the phosphohexose mutase family.
      
 0.680
STM1005
Gifsy-2 prophage integrase; Similar to E. coli putative transposase (AAC74651.1); Blastp hit to AAC74651.1 (398 aa), 54% identity in aa 2 - 393; Belongs to the 'phage' integrase family.
   
  
 0.668
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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