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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybhGMembrane permease predicted cation efflux pump; Similar to E. coli putative membrane protein (AAC73882.1); Blastp hit to AAC73882.1 (332 aa), 87% identity in aa 2 - 332. (331 aa)    
Predicted Functional Partners:
ybhF
Putative ABC-type multidrug transport system, ATPase component; Similar to E. coli putative ATP-binding component of a transport system (AAC73881.1); Blastp hit to AAC73881.1 (583 aa), 91% identity in aa 6 - 583.
  
 0.987
ybhS
Putative ABC superfamily (membrane) transport protein; Similar to E. coli orf, hypothetical protein (AAC73880.1); Blastp hit to AAC73880.1 (377 aa), 94% identity in aa 6 - 377.
  
 0.984
ybhR
Putative ABC superfamily (membrane) transport protein; Similar to E. coli orf, hypothetical protein (AAC73879.1); Blastp hit to AAC73879.1 (368 aa), 95% identity in aa 1 - 368.
  
 0.973
ybiH
Putative transcriptional repressor (TetR/AcrR family); Similar to E. coli putative transcriptional regulator (AAC73883.1); Blastp hit to AAC73883.1 (227 aa), 85% identity in aa 5 - 227.
  
 0.972
yfaZ
Putative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC75310.1); Blastp hit to AAC75310.1 (187 aa), 86% identity in aa 8 - 187.
      
 0.895
ybjZ
Putative ABC superfamily (atp&memb) transport protein; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 
 0.822
yhhJ
Putative ABC superfamily transport protein; Atp_bind/membrane; similar to E. coli putative transporter (AAC76510.1); Blastp hit to AAC76510.1 (375 aa), 92% identity in aa 2 - 375.
  
 0.681
STM0350
Homology to outer membrane efflux protein; Similar to E. coli putative resistance protein (AAC73673.1); Blastp hit to AAC73673.1 (457 aa), 37% identity in aa 7 - 457.
 
 
 0.611
yohG
Putative outer membrane efflux protein; Similar to E. coli putative channel/filament proteins (AAC75199.1); Blastp hit to AAC75199.1 (398 aa), 85% identity in aa 1 - 396.
 
 
 0.590
hslJ
Similar to E. coli heat shock protein hslJ (AAC74461.1); Blastp hit to AAC74461.1 (140 aa), 69% identity in aa 1 - 138.
      
 0.573
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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