STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybiOSimilar to E. coli putative transport protein (AAC73895.1); Blastp hit to AAC73895.1 (786 aa), 85% identity in aa 46 - 786. (740 aa)    
Predicted Functional Partners:
ybdG
Similar to E. coli putative transport (AAC73678.1); Blastp hit to AAC73678.1 (415 aa), 88% identity in aa 1 - 414.
      
 0.922
ycbC
Putative KicA protein; Similar to E. coli orf, hypothetical protein (AAC74006.1); Blastp hit to AAC74006.1 (259 aa), 89% identity in aa 1 - 256.
   
  
 0.864
yccR
Putative DNA transformation protein; Similar to E. coli orf, hypothetical protein (AAC74045.1); Blastp hit to AAC74045.1 (209 aa), 75% identity in aa 1 - 199.
   
  
 0.857
ycdX
Putative Histidinol phosphatase; Related to hydrolases of the PHP family; similar to E. coli orf, hypothetical protein (AAC74118.1); Blastp hit to AAC74118.1 (245 aa), 89% identity in aa 1 - 245.
   
  
 0.854
ynaI
Putative integral membrane protein; Similar to E. coli orf, hypothetical protein (AAC74412.1); Blastp hit to AAC74412.1 (343 aa), 77% identity in aa 1 - 335.
      
 0.801
yjeP
Similar to E. coli putative periplasmic binding protein (AAC77119.1); Blastp hit to AAC77119.1 (1107 aa), 89% identity in aa 1 - 1107.
  
  
 0.769
yiaN
Similar to E. coli putative membrane protein (AAC76602.1); Blastp hit to AAC76602.1 (424 aa), 90% identity in aa 1 - 398.
      
 0.728
yggB
Putative membrane protein; Involved in stability of MscS mechanosensitive channel; similar to E. coli putative transport protein (AAC75961.1); Blastp hit to AAC75961.1 (286 aa), 91% identity in aa 1 - 285.
      
 0.697
ybhC
Similar to E. coli putative pectinesterase (AAC73859.1); Blastp hit to AAC73859.1 (427 aa), 86% identity in aa 1 - 427.
  
     0.690
glnP
ABC superfamily (membrane); similar to E. coli glutamine high-affinity transport system; membrane component (AAC73897.1); Blastp hit to AAC73897.1 (219 aa), 96% identity in aa 1 - 219.
 
    0.644
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.