STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yliHPutative cytoplasmic protein; Similar to E. coli putative receptor (AAC73923.1); Blastp hit to AAC73923.1 (127 aa), 78% identity in aa 1 - 124. (127 aa)    
Predicted Functional Partners:
yfgD
Similar to E. coli putative oxidoreductase (AAC75548.1); Blastp hit to AAC75548.1 (119 aa), 83% identity in aa 1 - 119.
   
  
 0.861
ais
Aluminum inducible protein; Catalyzes the dephosphorylation of heptose(II) of the outer membrane lipopolysaccharide core. Required for iron(3+) resistance. Belongs to the phosphoglycerate mutase family. Ais subfamily.
      
 0.859
cvpA
Similar to E. coli membrane protein required for colicin V production (AAC75373.1); Blastp hit to AAC75373.1 (162 aa), 96% identity in aa 1 - 161.
      
 0.853
ybaJ
Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC73563.1); Blastp hit to AAC73563.1 (124 aa), 95% identity in aa 1 - 124.
      
 0.852
chaA
Similar to E. coli sodium-calcium/proton antiporter (AAC74300.1); Blastp hit to AAC74300.1 (366 aa), 93% identity in aa 1 - 366.
      
 0.720
osmB
Osmotically inducible lipoprotein; Provides resistance to osmotic stress. May be important for stationary-phase survival (By similarity).
   
  
 0.675
yliG
Putative Fe-S oxidoreductases family 1; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.
       0.483
STM0718
Putative cytoplasmic protein.
      
 0.451
yhhA
Putative outer membrane protein; Similar to E. coli orf, hypothetical protein (AAC76473.1); Blastp hit to AAC76473.1 (146 aa), 66% identity in aa 1 - 146.
   
    0.419
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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