Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
STM0854Putative cytoplasmic protein; Belongs to the HpcH/HpaI aldolase family. (171 aa)    
Predicted Functional Partners:
STM0856
Putative electron transfer flavoprotein alpha subunit; Similar to E. coli putative flavoprotein (AAC74768.1); Blastp hit to AAC74768.1 (312 aa), 35% identity in aa 65 - 310.
  
    0.965
STM0855
Putative electron transfer flavoprotein beta subunit; Similar to E. coli probable flavoprotein subunit, carnitine metabolism (AAC73152.1); Blastp hit to AAC73152.1 (268 aa), 27% identity in aa 13 - 248.
  
    0.952
STM3120
Putative LysR family transcriptional regulator; Similar to E. coli citrate lyase beta chain (acyl lyase subunit) (AAC73717.1); Blastp hit to AAC73717.1 (307 aa), 31% identity in aa 20 - 299; Belongs to the HpcH/HpaI aldolase family.
  
  
 0.935
STM0857
Putative acyl-CoA dehydrogenase; Similar to E. coli putative oxidoreductase (AAC74765.1); Blastp hit to AAC74765.1 (401 aa), 28% identity in aa 33 - 390.
 
  
 0.913
STM0859
Similar to E. coli putative transcriptional regulator LYSR-type (AAC74667.1); Blastp hit to AAC74667.1 (297 aa), 28% identity in aa 1 - 264; Belongs to the LysR transcriptional regulatory family.
   
  
 0.910
STM3117
Putative lactoylglutathione lyase; Is critically involved in promoting the replication of S.typhimurium cells inside host macrophages, suggesting a role in the establishment of bacterial colonization within macrophages. May be involved in the biosynthesis and modification of the peptidoglycan layer of the cell wall.
 
  
 0.905
stfD
Periplasmic fimbrial chaperone StfD (gi|3747031).
   
  
 0.819
citF2
Bifunctional; similar to E. coli citrate lyase alpha chain (AAC73716.1); Blastp hit to AAC73716.1 (510 aa), 72% identity in aa 30 - 509; putative citrate-ACP transferase.
 
  
 0.814
citF
Bifunctional; similar to E. coli citrate lyase alpha chain (AAC73716.1); Blastp hit to AAC73716.1 (510 aa), 88% identity in aa 1 - 510; citrate-ACP transferase.
 
  
 0.812
citD2
Putative citrate lyase acyl carrier protein, gamma chain; Covalent carrier of the coenzyme of citrate lyase.
 
  
 0.793
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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