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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yliISimilar to E. coli putative dehydrogenase (AAC73924.1); Blastp hit to AAC73924.1 (371 aa), 75% identity in aa 197 - 369. (226 aa)    
Predicted Functional Partners:
yihX
Similar to E. coli putative phosphatase (AAD13447.1); Blastp hit to AAD13447.1 (206 aa), 89% identity in aa 8 - 206.
     
 0.682
bglX
Periplasmic beta-D-glucoside glucohydrolase; Periplasmic beta-glucosidase precursor. (SW:BGLX_SALTY); Belongs to the glycosyl hydrolase 3 family.
 
   
 0.541
malZ
Similar to E. coli maltodextrin glucosidase (AAC73506.1); Blastp hit to AAC73506.1 (605 aa), 83% identity in aa 2 - 605; Belongs to the glycosyl hydrolase 13 family.
      
 0.459
treR
Transcriptional repressor of treABC; Repressor of the treBC operon. It is able to bind trehalose- 6-phosphate.
      
 0.456
STM0860
Putative inner membrane protein.
  
    0.432
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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