Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
STM0886Similar to E. coli putative sulfatase (AAC76701.1); Blastp hit to AAC76701.1 (497 aa), 25% identity in aa 7 - 358, 26% identity in aa 401 - 446. (495 aa)    
Predicted Functional Partners:
STM0884
Putative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC77150.1); Blastp hit to AAC77150.1 (484 aa), 38% identity in aa 20 - 441.
 
    0.839
STM0885
Putative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC77151.1); Blastp hit to AAC77151.1 (101 aa), 25% identity in aa 2 - 97.
  
    0.800
STM0084
Similar to E. coli putative sulfatase (AAC76701.1); Blastp hit to AAC76701.1 (497 aa), 31% identity in aa 251 - 345, 31% identity in aa 5 - 103, 45% identity in aa 400 - 431.
  
     0.706
STM3122
Similar to E. coli putative sulfatase (AAC74571.1); Blastp hit to AAC74571.1 (571 aa), 27% identity in aa 120 - 327, 43% identity in aa 322 - 358, 37% identity in aa 44 - 86, 31% identity in aa 435 - 471.
  
    0.684
ybjF
Putative tRNA (uracil-5-)-methyltransferase; Catalyzes the formation of 5-methyl-uridine at position 747 (m5U747) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmC subfamily.
  
    0.649
ybjO
Putative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC73945.1); Blastp hit to AAC73945.1 (162 aa), 80% identity in aa 6 - 162.
  
    0.636
STM0036
Similar to E. coli putative arylsulfatase regulator (AAC76803.1); Blastp hit to AAC76803.1 (411 aa), 46% identity in aa 8 - 401.
 
     0.571
potI
Putrescine transporter; ABC superfamily (membrane); similar to E. coli putrescine transport protein; permease (AAC73944.1); Blastp hit to AAC73944.1 (281 aa), 94% identity in aa 1 - 281.
  
    0.566
STM1287
Similar to E. coli putative arylsulfatase regulator (AAC76803.1); Blastp hit to AAC76803.1 (411 aa), 46% identity in aa 10 - 401.
 
     0.560
STM3966
Similar to E. coli putative arylsulfatase regulator (AAC76803.1); Blastp hit to AAC76803.1 (411 aa), 47% identity in aa 11 - 402.
 
     0.553
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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