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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
STM0907Putative Fels-1 prophage chitinase. (204 aa)    
Predicted Functional Partners:
STM0906
Fels-1 prophage protein.
  
    0.913
STM0908
Fels-1 prophage protein; Bacteriophage ES18 gp15 protein (gi|1143595).
  
  
 0.875
STM2240
Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC74633.1); Blastp hit to AAC74633.1 (362 aa), 84% identity in aa 251 - 362, 43% identity in aa 14 - 238.
   
    0.668
STM0925
Putative Fels-1 prophage host specificity protein.
  
    0.628
STM2235
Putative phage protein; Similar to E. coli orf, hypothetical protein (AAC74238.1); Blastp hit to AAC74238.1 (209 aa), 62% identity in aa 1 - 74.
  
    0.546
STM1046
Gifsy-2 prophage probable tail assembly protein.
  
    0.543
STM0922
Putative Fels-1 prophage tail assembly protein.
  
    0.532
STM2706
Fels-2 prophage protein; Similar to tail fiber protein in phage P2.
  
    0.518
STM3098
Putative transcriptional regulator.
  
    0.515
STM0918
Putative Fels-1 prophage minor tail protein; Lambda phage H tail component homolog (gi|2232364).
  
    0.509
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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