Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
STM0908Fels-1 prophage protein; Bacteriophage ES18 gp15 protein (gi|1143595). (161 aa)    
Predicted Functional Partners:
STM0906
Fels-1 prophage protein.
  
    0.986
STM0907
Putative Fels-1 prophage chitinase.
  
    0.878
STM1869A
Hypothetical protein.
  
    0.684
STM2706
Fels-2 prophage protein; Similar to tail fiber protein in phage P2.
  
    0.660
STM0925
Putative Fels-1 prophage host specificity protein.
   
    0.471
ycdD
Putative Fels-1 prophage tail assembly protein; Hypothetical protein in nanH 3'region. (SW:YCDD_SALTY); Belongs to the tfa family.
   
    0.471
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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