Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ybjQPutative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC73953.1); Blastp hit to AAC73953.1 (107 aa), 94% identity in aa 1 - 107; Belongs to the UPF0145 family. (107 aa)    
Predicted Functional Partners:
ybjR
Similar to E. coli putative regulator (AAC73954.1); Blastp hit to AAC73954.1 (276 aa), 81% identity in aa 1 - 276.
 
    0.983
STM0893
Putative Fels-1 prophage integrase; Similar to E. coli putative transposase (AAC74651.1); Blastp hit to AAC74651.1 (398 aa), 55% identity in aa 2 - 398; Belongs to the 'phage' integrase family.
   
  
 0.954
STM0929
Putative inner membrane protein.
   
  
 0.954
STM0565
Putative periplasmic protein; Similar to E. coli orf, hypothetical protein (AAC73406.1); Blastp hit to AAC73406.1 (83 aa), 53% identity in aa 6 - 83.
      
 0.726
STM3362
Putative periplasmic protein; Similar to E. coli orf, hypothetical protein (AAC76270.1); Blastp hit to AAC76270.1 (104 aa), 53% identity in aa 18 - 104.
      
 0.726
STM2636
Gifsy-1 prophage protein; Similar to integrase in phage; probable integrase (gi|7467280); Belongs to the 'phage' integrase family.
      
 0.722
yjfO
Putative lipoprotein; Similar to E. coli orf, hypothetical protein (AAC77146.1); Blastp hit to AAC77146.1 (142 aa), 78% identity in aa 34 - 142.
   
  
 0.721
yjfY
Putative outer membrane protein; Similar to E. coli orf, hypothetical protein (AAC77156.1); Blastp hit to AAC77156.1 (91 aa), 71% identity in aa 1 - 91.
      
 0.713
STM2767
Putative superfamily I DNA and RNA helicase.
      
 0.689
flgH
Flagellar biosynthesis protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
   
    0.567
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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