Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
STM0948Putative cytoplasmic protein. (133 aa)    
Predicted Functional Partners:
STM0947
Putative integrase protein; Similar to E. coli IS150 putative transposase (AAC76582.1); Blastp hit to AAC76582.1 (283 aa), 29% identity in aa 109 - 279.
  
 0.997
STM3258
Sugar specific-family of transport protein; similar to E. coli galactitol-specific enzyme IIA of phosphotransferase system (AAC75155.1); Blastp hit to AAC75155.1 (150 aa), 60% identity in aa 1 - 150.
      
 0.855
STM2729
Fels-2 prophage protein; Possible endonuclease which induces a single-strand cut and initiates DNA replication.
  
     0.659
ybdL
Similar to E. coli putative aminotransferase (AAC73701.1); Blastp hit to AAC73701.1 (386 aa), 85% identity in aa 1 - 386.
      
 0.545
STM2718
Fels-2 prophage protein; Similar to gpQ in phage 186.
  
     0.466
STM2719
Fels-2 prophage protein; Similar to gpR in phage 186.
  
     0.460
bigA
Putative surface-exposed virulence protein BigA (gi|5081595).
  
     0.422
STM0950
Homolog of slsA in STM; SlsA (gi|4324613).
  
    0.413
yhhF
Putative methyltransferase; Specifically methylates the guanine in position 966 of 16S rRNA in the assembled 30S particle; Belongs to the methyltransferase superfamily. RsmD family.
  
    0.408
yhiQ
Putative SAM-dependent methyltransferase; Specifically methylates the guanosine in position 1516 of 16S rRNA.
  
    0.408
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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