STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
STM1005Gifsy-2 prophage integrase; Similar to E. coli putative transposase (AAC74651.1); Blastp hit to AAC74651.1 (398 aa), 54% identity in aa 2 - 393; Belongs to the 'phage' integrase family. (430 aa)    
Predicted Functional Partners:
STM2589
Gifsy-1 prophage protein; Similar to host specificity protein-J in phage lambda.
   
  
 0.939
STM2732
Fels-2 prophage protein; Similar to protein in phage 186.
      
 0.938
STM4198
Putative cytoplasmic protein.
      
 0.935
STM1056
Gifsy-2 prophage protein; Similar to msgA; hypothetical protein (gi|5410521).
      
 0.928
STM2636
Gifsy-1 prophage protein; Similar to integrase in phage; probable integrase (gi|7467280); Belongs to the 'phage' integrase family.
   
  
 0.899
STM1010
Gifsy-2 prophage protein; Hypothetical protein 4 (gi|7467264).
     
 0.781
pncB
Nicotinate phosphoribosyltransferase; Catalyzes the synthesis of beta-nicotinate D-ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP.
       0.773
tnpA_3
Transposase for insertion sequence element is200 (SW:T200_SALTY).
      
 0.697
STM2631
Gifsy-1 prophage protein; Hypothetical protein 4 (gi|7467264).
      
 0.680
pnuC
NMN family, nucleoside/purine/pyrimidine transporter; Required for nicotinamide riboside transport across the inner membrane.
      
 0.673
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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