Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
STM1014Gifsy-2 prophage putative regulatory protein; Probable replication protein (gi|7467283). (327 aa)    
Predicted Functional Partners:
STM1015
Gifsy-2 prophage ATPase involved in DNA replication initiation; dnaC protein homolog (gi|7443681).
 
  
 0.846
STM1016
Gifsy-2 prophage protein; Hypothetical protein (gi|7467246).
  
    0.786
STM1017
Gifsy-2 prophage protein; Hypothetical protein 11 (gi|7467260).
  
    0.774
STM4261
Putative inner membrane protein; Fusion of two hypothetical proteins; (gi|7467255) and (gi|7467255).
  
     0.661
STM0898
Predicted Fels-1 prophage transcriptional regulator.
 
    0.639
wcaK
Putative galactokinase; In colanic acid gene cluster; similar to E. coli putative galactokinase. (AAC75106.1); Blastp hit to AAC75106.1 (426 aa), 67% identity in aa 1 - 426.
  
     0.576
STM1018
Gifsy-2 prophage protein; Hypothetical protein 11 (gi|7467261).
  
    0.561
STM1013
Gifsy-2 prophage putative regulatory protein; Probable regulatory protein (gi|7467282).
  
    0.560
STM3098
Putative transcriptional regulator.
  
     0.539
fliB
N-methylation of lysine residues in flagellin; Post-translationally modifies flagellin by methylation of epsilon amino group of surface-exposed lysine residues.
  
     0.510
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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